J5_6VZ7_004

3D structure

PDB id

6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6VZ7|1|a|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VZ7_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0381

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6VZ7|1|a|C|47
6VZ7|1|a|G|48
6VZ7|1|a|A|49
6VZ7|1|a|U|50
6VZ7|1|a|G|51
6VZ7|1|a|A|52
6VZ7|1|a|A|53
6VZ7|1|a|G|54
*
6VZ7|1|a|C|116
6VZ7|1|a|G|117
6VZ7|1|a|A|118
6VZ7|1|a|A|119
6VZ7|1|a|U|120
6VZ7|1|a|G|121
*
6VZ7|1|a|C|130
6VZ7|1|a|A|131
*
6VZ7|1|a|U|148
6VZ7|1|a|A|149
6VZ7|1|a|U|150
*
6VZ7|1|a|A|176
6VZ7|1|a|G|177
6VZ7|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34