J5_6W2S_003
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6W2S|1|A|U|55, 6W2S|1|A|A|92, 6W2S|1|A|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6W2S_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0802
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6W2S|1|A|C|53
6W2S|1|A|A|54
6W2S|1|A|U|55
6W2S|1|A|G|56
*
6W2S|1|A|C|89
6W2S|1|A|G|90
6W2S|1|A|A|91
6W2S|1|A|A|92
6W2S|1|A|U|93
6W2S|1|A|G|94
6W2S|1|A|G|95
6W2S|1|A|C|96
*
6W2S|1|A|G|434
6W2S|1|A|A|435
6W2S|1|A|G|436
*
6W2S|1|A|C|457
6W2S|1|A|A|458
6W2S|1|A|C|459
*
6W2S|1|A|G|470
6W2S|1|A|G|471
6W2S|1|A|C|472
6W2S|1|A|A|473
6W2S|1|A|G|474
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain F
- eS4
- Chain H
- eS6
- Chain J
- eS8
- Chain K
- uS4
- Chain Z
- eS24
Coloring options: