J5_6W2T_005

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

GUCGCUCGACUU*AUGCCGACGGG*UG*CCG*CGACC

Length

33 nucleotides

Bulged bases

6W2T|1|a|C|127, 6W2T|1|a|C|142, 6W2T|1|a|U|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2T|1|a|G|123
6W2T|1|a|U|124
6W2T|1|a|C|125
6W2T|1|a|G|126
6W2T|1|a|C|127
6W2T|1|a|U|128
6W2T|1|a|C|129
6W2T|1|a|G|130
6W2T|1|a|A|141
6W2T|1|a|C|142
6W2T|1|a|U|143
6W2T|1|a|U|144
*
6W2T|1|a|A|175
6W2T|1|a|U|176
6W2T|1|a|G|177
6W2T|1|a|C|178
6W2T|1|a|C|179
6W2T|1|a|G|180
6W2T|1|a|A|181
6W2T|1|a|C|182
6W2T|1|a|G|183
6W2T|1|a|G|184
6W2T|1|a|G|185
*
6W2T|1|a|U|214
6W2T|1|a|G|215
*
6W2T|1|a|C|310
6W2T|1|a|C|311
6W2T|1|a|G|312
*
6W2T|1|a|C|337
6W2T|1|a|G|338
6W2T|1|a|A|339
6W2T|1|a|C|340
6W2T|1|a|C|341

Current chains

Chain a

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6

Chain J

eS8