J5_6W2T_009
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- AUCUUG*CUG*CGUU*AUGGAAUAGG*CAUGAU
- Length
- 29 nucleotides
- Bulged bases
- 6W2T|1|a|C|687, 6W2T|1|a|U|871, 6W2T|1|a|G|873, 6W2T|1|a|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6W2T|1|a|A|685
6W2T|1|a|U|686
6W2T|1|a|C|687
6W2T|1|a|U|688
6W2T|1|a|U|689
6W2T|1|a|G|690
*
6W2T|1|a|C|736
6W2T|1|a|U|743
6W2T|1|a|G|744
*
6W2T|1|a|C|797
6W2T|1|a|G|798
6W2T|1|a|U|799
6W2T|1|a|U|800
*
6W2T|1|a|A|865
6W2T|1|a|U|866
6W2T|1|a|G|867
6W2T|1|a|G|868
6W2T|1|a|A|869
6W2T|1|a|A|870
6W2T|1|a|U|871
6W2T|1|a|A|872
6W2T|1|a|G|873
6W2T|1|a|G|874
*
6W2T|1|a|C|912
6W2T|1|a|A|913
6W2T|1|a|U|914
6W2T|1|a|G|915
6W2T|1|a|A|916
6W2T|1|a|U|917
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain F
- eS4
- Chain I
- eS7
- Chain M
- uS17
- Chain O
- uS15
- Chain X
- uS8
- Chain Y
- uS12
Coloring options: