J5_6W6L_004
3D structure
- PDB id
- 6W6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ribosome-TMCO1 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6W6L|1|t|A|3879, 6W6L|1|t|A|4356, 6W6L|1|t|U|4412, 6W6L|1|t|G|4413, 6W6L|1|t|U|4414, 6W6L|1|t|U|4517, 6W6L|1|t|U|4518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6W6L|1|t|A|3874
6W6L|1|t|G|3875
6W6L|1|t|A|3876
6W6L|1|t|A|3877
6W6L|1|t|G|3878
6W6L|1|t|A|3879
6W6L|1|t|C|3880
6W6L|1|t|C|3881
*
6W6L|1|t|G|4354
6W6L|1|t|G|4355
6W6L|1|t|A|4356
6W6L|1|t|U|4357
6W6L|1|t|A|4358
6W6L|1|t|A|4359
6W6L|1|t|C|4360
6W6L|1|t|U|4361
6W6L|1|t|G|4362
*
6W6L|1|t|C|4406
6W6L|1|t|U|4407
6W6L|1|t|U|4408
6W6L|1|t|C|4409
6W6L|1|t|G|4410
6W6L|1|t|A|4411
6W6L|1|t|U|4412
6W6L|1|t|G|4413
6W6L|1|t|U|4414
6W6L|1|t|C|4415
*
6W6L|1|t|G|4490
6W6L|1|t|G|4491
6W6L|1|t|U|4492
6W6L|1|t|U|4493
6W6L|1|t|U|4494
6W6L|1|t|A|4495
6W6L|1|t|G|4496
*
6W6L|1|t|U|4514
6W6L|1|t|A|4515
6W6L|1|t|G|4516
6W6L|1|t|U|4517
6W6L|1|t|U|4518
6W6L|1|t|U|4519
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4
- Chain b
- 60S ribosomal protein L27a
- Chain c
- 60S ribosomal protein L29
- Chain u
- Transfer RNA; tRNA
- Chain y
- Nascent chain mixture
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