J5_6W7W_003

3D structure

PDB id

6W7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-low-Mg2+ Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6W7W|1|2|A|60, 6W7W|1|2|A|109, 6W7W|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6W7W_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.1094

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6W7W|1|2|C|58
6W7W|1|2|A|59
6W7W|1|2|A|60
6W7W|1|2|G|61
*
6W7W|1|2|C|106
6W7W|1|2|G|107
6W7W|1|2|G|108
6W7W|1|2|A|109
6W7W|1|2|C|110
6W7W|1|2|G|111
6W7W|1|2|G|112
6W7W|1|2|G|113
*
6W7W|1|2|C|314
6W7W|1|2|A|315
6W7W|1|2|C|316
*
6W7W|1|2|G|337
6W7W|1|2|A|338
6W7W|1|2|C|339
*
6W7W|1|2|G|350
6W7W|1|2|G|351
6W7W|1|2|C|352
6W7W|1|2|A|353
6W7W|1|2|G|354

Current chains

Chain 2

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S16

Chain S

30S ribosomal protein S20