J5_6WD7_002

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

6WD7|1|1|A|532, 6WD7|1|1|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6WD7_002 not in the Motif Atlas

Homologous match to J5_5J7L_014

Geometric discrepancy: 0.1079

The information below is about J5_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6WD7|1|1|C|531
6WD7|1|1|A|532
6WD7|1|1|G|533
*
6WD7|1|1|C|560
6WD7|1|1|G|561
6WD7|1|1|U|562
6WD7|1|1|A|563
6WD7|1|1|C|564
*
6WD7|1|1|G|577
6WD7|1|1|G|578
6WD7|1|1|G|579
*
6WD7|1|1|C|1261
6WD7|1|1|A|1262
*
6WD7|1|1|U|2017
6WD7|1|1|G|2018

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain d

50S ribosomal protein L4

Chain q

50S ribosomal protein L20

Chain r

50S ribosomal protein L21

Chain s

50S ribosomal protein L22