J5_6WDR_002
3D structure
- PDB id
- 6WDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6WDR|1|2|U|56, 6WDR|1|2|A|93, 6WDR|1|2|C|687
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WDR_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1424
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6WDR|1|2|C|54
6WDR|1|2|A|55
6WDR|1|2|U|56
6WDR|1|2|G|57
*
6WDR|1|2|C|90
6WDR|1|2|G|91
6WDR|1|2|A|92
6WDR|1|2|A|93
6WDR|1|2|U|94
6WDR|1|2|G|95
6WDR|1|2|G|96
6WDR|1|2|C|97
*
6WDR|1|2|G|649
6WDR|1|2|A|650
6WDR|1|2|G|651
*
6WDR|1|2|C|672
6WDR|1|2|A|673
6WDR|1|2|C|674
*
6WDR|1|2|G|685
6WDR|1|2|G|686
6WDR|1|2|C|687
6WDR|1|2|A|688
6WDR|1|2|G|689
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-A
- Chain G
- 40S ribosomal protein S6-A
- Chain I
- 40S ribosomal protein S8-A
- Chain J
- 40S ribosomal protein S9-A
- Chain Y
- 40S ribosomal protein S24-A
- Chain k
- Ribosome biogenesis protein TSR1
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