J5_6WNW_007
3D structure
- PDB id
- 6WNW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 6WNW|1|4|U|1886, 6WNW|1|4|G|1891
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WNW_007 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0762
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6WNW|1|4|G|1802
6WNW|1|4|C|1803
6WNW|1|4|A|1804
6WNW|1|4|A|1805
6WNW|1|4|A|1806
6WNW|1|4|A|1807
6WNW|1|4|U|1808
6WNW|1|4|G|1809
6WNW|1|4|G|1810
*
6WNW|1|4|C|1834
6WNW|1|4|G|1835
*
6WNW|1|4|U|1879
6WNW|1|4|C|1880
*
6WNW|1|4|G|1884
6WNW|1|4|A|1885
6WNW|1|4|U|1886
6WNW|1|4|A|1887
6WNW|1|4|C|1888
6WNW|1|4|C|1889
6WNW|1|4|A|1890
6WNW|1|4|G|1891
6WNW|1|4|C|1892
*
6WNW|1|4|G|2116
6WNW|1|4|G|2117
6WNW|1|4|C|2118
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
- Chain p
- 50S ribosomal protein L19
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