J5_6WOO_001

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6WOO|1|2|A|540, 6WOO|1|2|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|2|C|30
6WOO|1|2|U|31
6WOO|1|2|U|32
6WOO|1|2|G|33
6WOO|1|2|U|34
*
6WOO|1|2|A|472
6WOO|1|2|A|473
6WOO|1|2|A|474
6WOO|1|2|U|475
6WOO|1|2|A|476
6WOO|1|2|A|477
6WOO|1|2|C|478
*
6WOO|1|2|G|508
6WOO|1|2|G|509
6WOO|1|2|A|510
6WOO|1|2|A|511
6WOO|1|2|U|512
6WOO|1|2|G|513
6WOO|1|2|A|514
6WOO|1|2|G|515
*
6WOO|1|2|C|535
6WOO|1|2|G|536
6WOO|1|2|A|537
6WOO|1|2|G|538
6WOO|1|2|G|539
6WOO|1|2|A|540
6WOO|1|2|A|541
6WOO|1|2|C|542
6WOO|1|2|A|543
6WOO|1|2|A|544
6WOO|1|2|U|545
*
6WOO|1|2|A|591
6WOO|1|2|U|592
6WOO|1|2|A|593
6WOO|1|2|G|594

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12

Chain ee

eS30