J5_6WOO_004

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAGUUCCUUUACUACAU*AUGCUUAAAA*UG*CGAAU*AUGGUU

Length

41 nucleotides

Bulged bases

6WOO|1|2|U|127, 6WOO|1|2|U|131, 6WOO|1|2|U|132, 6WOO|1|2|U|133, 6WOO|1|2|A|134, 6WOO|1|2|C|135, 6WOO|1|2|C|138, 6WOO|1|2|A|139, 6WOO|1|2|U|177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WOO|1|2|A|123
6WOO|1|2|U|124
6WOO|1|2|A|125
6WOO|1|2|G|126
6WOO|1|2|U|127
6WOO|1|2|U|128
6WOO|1|2|C|129
6WOO|1|2|C|130
6WOO|1|2|U|131
6WOO|1|2|U|132
6WOO|1|2|U|133
6WOO|1|2|A|134
6WOO|1|2|C|135
6WOO|1|2|U|136
6WOO|1|2|A|137
6WOO|1|2|C|138
6WOO|1|2|A|139
6WOO|1|2|U|140
*
6WOO|1|2|A|172
6WOO|1|2|U|173
6WOO|1|2|G|174
6WOO|1|2|C|175
6WOO|1|2|U|176
6WOO|1|2|U|177
6WOO|1|2|A|178
6WOO|1|2|A|179
6WOO|1|2|A|180
6WOO|1|2|A|181
*
6WOO|1|2|U|202
6WOO|1|2|G|203
*
6WOO|1|2|C|262
6WOO|1|2|G|263
6WOO|1|2|A|264
6WOO|1|2|A|265
6WOO|1|2|U|266
*
6WOO|1|2|A|287
6WOO|1|2|U|288
6WOO|1|2|G|289
6WOO|1|2|G|290
6WOO|1|2|U|291
6WOO|1|2|U|292

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain GG

eS6

Chain II

eS8