J5_6WOO_005
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6WOO|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WOO_005 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0575
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|5|A|20
6WOO|1|5|G|21
6WOO|1|5|G|22
*
6WOO|1|8|C|35
6WOO|1|8|G|36
6WOO|1|8|A|37
6WOO|1|8|U|38
6WOO|1|8|G|39
6WOO|1|8|A|40
6WOO|1|8|A|41
6WOO|1|8|G|42
*
6WOO|1|8|U|102
6WOO|1|8|G|103
6WOO|1|8|A|104
6WOO|1|8|A|105
6WOO|1|8|C|106
6WOO|1|8|G|107
*
6WOO|1|8|C|115
6WOO|1|8|G|116
*
6WOO|1|8|C|137
6WOO|1|8|A|138
6WOO|1|8|U|139
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal rRNA
Nearby chains
- Chain N
- eL15
- Chain X
- uL23
- Chain h
- uL29
- Chain j
- eL37
- Chain l
- eL39
Coloring options: