J5_6WOO_008
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6WOO|1|5|G|2116, 6WOO|1|5|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WOO_008 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0756
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6WOO|1|5|G|1906
6WOO|1|5|C|1907
6WOO|1|5|A|1908
6WOO|1|5|A|1909
6WOO|1|5|A|1910
6WOO|1|5|A|1911
6WOO|1|5|U|1912
6WOO|1|5|A|1913
6WOO|1|5|G|1914
*
6WOO|1|5|U|1938
6WOO|1|5|G|1939
*
6WOO|1|5|U|2109
6WOO|1|5|G|2110
*
6WOO|1|5|C|2114
6WOO|1|5|G|2115
6WOO|1|5|G|2116
6WOO|1|5|A|2117
6WOO|1|5|C|2118
6WOO|1|5|A|2119
6WOO|1|5|A|2120
6WOO|1|5|G|2121
6WOO|1|5|G|2122
*
6WOO|1|5|C|2331
6WOO|1|5|A|2332
6WOO|1|5|C|2333
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- uL3
- Chain R
- eL19
- Chain V
- uL14
- Chain W
- eL24
Coloring options: