J5_6WOO_009
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6WOO|1|5|A|2404, 6WOO|1|5|A|2817, 6WOO|1|5|G|2874, 6WOO|1|5|U|2978, 6WOO|1|5|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|5|A|2399
6WOO|1|5|G|2400
6WOO|1|5|A|2401
6WOO|1|5|A|2402
6WOO|1|5|G|2403
6WOO|1|5|A|2404
6WOO|1|5|C|2405
6WOO|1|5|C|2406
*
6WOO|1|5|G|2815
6WOO|1|5|G|2816
6WOO|1|5|A|2817
6WOO|1|5|U|2818
6WOO|1|5|A|2819
6WOO|1|5|A|2820
6WOO|1|5|C|2821
6WOO|1|5|U|2822
6WOO|1|5|G|2823
*
6WOO|1|5|C|2867
6WOO|1|5|U|2868
6WOO|1|5|U|2869
6WOO|1|5|C|2870
6WOO|1|5|G|2871
6WOO|1|5|A|2872
6WOO|1|5|U|2873
6WOO|1|5|G|2874
6WOO|1|5|U|2875
6WOO|1|5|C|2876
*
6WOO|1|5|G|2951
6WOO|1|5|G|2952
6WOO|1|5|U|2953
6WOO|1|5|U|2954
6WOO|1|5|U|2955
6WOO|1|5|A|2956
6WOO|1|5|G|2957
*
6WOO|1|5|U|2975
6WOO|1|5|A|2976
6WOO|1|5|G|2977
6WOO|1|5|U|2978
6WOO|1|5|U|2979
6WOO|1|5|U|2980
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain B
- uL3
- Chain C
- uL4
- Chain P
- uL22
- Chain a
- uL15
- Chain b
- eL29
Coloring options: