3D structure

PDB id
6WRS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
Length
25 nucleotides
Bulged bases
6WRS|1|1|G|1785, 6WRS|1|1|G|1790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6WRS_003 not in the Motif Atlas
Homologous match to J5_4WF9_005
Geometric discrepancy: 0.1165
The information below is about J5_4WF9_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6WRS|1|1|G|1718
6WRS|1|1|C|1719
6WRS|1|1|A|1720
6WRS|1|1|A|1721
6WRS|1|1|A|1722
6WRS|1|1|A|1723
6WRS|1|1|U|1724
6WRS|1|1|G|1725
6WRS|1|1|A|1726
*
6WRS|1|1|U|1750
6WRS|1|1|G|1751
*
6WRS|1|1|C|1778
6WRS|1|1|C|1779
*
6WRS|1|1|G|1783
6WRS|1|1|U|1784
6WRS|1|1|G|1785
6WRS|1|1|A|1786
6WRS|1|1|A|1787
6WRS|1|1|U|1788
6WRS|1|1|A|1789
6WRS|1|1|G|1790
6WRS|1|1|G|1791
*
6WRS|1|1|C|2015
6WRS|1|1|A|2016
6WRS|1|1|C|2017

Current chains

Chain 1
23S rRNA

Nearby chains

Chain A
50S ribosomal protein L19
Chain L
50S ribosomal protein L3
Chain W
50S ribosomal protein L14

Coloring options:


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