J5_6WYV_002

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

6WYV|1|I|A|532, 6WYV|1|I|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6WYV_002 not in the Motif Atlas

Homologous match to J5_5J7L_014

Geometric discrepancy: 0.071

The information below is about J5_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6WYV|1|I|C|531
6WYV|1|I|A|532
6WYV|1|I|G|533
*
6WYV|1|I|C|560
6WYV|1|I|G|561
6WYV|1|I|U|562
6WYV|1|I|A|563
6WYV|1|I|C|564
*
6WYV|1|I|G|577
6WYV|1|I|G|578
6WYV|1|I|G|579
*
6WYV|1|I|C|1261
6WYV|1|I|A|1262
*
6WYV|1|I|U|2017
6WYV|1|I|G|2018

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4