J5_6WYV_004

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6WYV|1|I|U|1758, 6WYV|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6WYV_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.2802

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WYV|1|I|G|1674
6WYV|1|I|C|1675
6WYV|1|I|A|1676
6WYV|1|I|A|1677
6WYV|1|I|A|1678
6WYV|1|I|A|1679
6WYV|1|I|U|1680
6WYV|1|I|G|1681
6WYV|1|I|G|1682
*
6WYV|1|I|C|1706
6WYV|1|I|G|1707
*
6WYV|1|I|U|1751
6WYV|1|I|C|1752
*
6WYV|1|I|G|1756
6WYV|1|I|A|1757
6WYV|1|I|U|1758
6WYV|1|I|A|1759
6WYV|1|I|C|1760
6WYV|1|I|C|1761
6WYV|1|I|A|1762
6WYV|1|I|G|1763
6WYV|1|I|C|1764
*
6WYV|1|I|G|1988
6WYV|1|I|G|1989
6WYV|1|I|C|1990

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3