J5_6XA1_002
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGU(OMC)*G(2MG)AC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 6XA1|1|L5|C|2276, 6XA1|1|L5|U|2337
- QA status
- Modified nucleotides: OMC, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XA1_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0727
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6XA1|1|L5|G|1322
6XA1|1|L5|G|1323
6XA1|1|L5|A|1324
6XA1|1|L5|G|1325
6XA1|1|L5|U|1326
6XA1|1|L5|OMC|1327
*
6XA1|1|L5|G|1503
6XA1|1|L5|2MG|1504
6XA1|1|L5|A|1505
6XA1|1|L5|C|1506
*
6XA1|1|L5|G|1645
6XA1|1|L5|U|1646
6XA1|1|L5|U|1647
6XA1|1|L5|C|1648
*
6XA1|1|L5|G|2275
6XA1|1|L5|C|2276
6XA1|1|L5|C|2277
*
6XA1|1|L5|G|2332
6XA1|1|L5|C|2333
6XA1|1|L5|A|2334
6XA1|1|L5|G|2335
6XA1|1|L5|A|2336
6XA1|1|L5|U|2337
6XA1|1|L5|OMC|2338
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Le
- 60S ribosomal protein L32
- Chain Lr
- 60S ribosomal protein L28
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