J5_6XA1_003
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6XA1|1|L5|G|3599, 6XA1|1|L5|G|3604
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XA1_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1113
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XA1|1|L5|G|2842
6XA1|1|L5|C|2843
6XA1|1|L5|A|2844
6XA1|1|L5|A|2845
6XA1|1|L5|G|2846
6XA1|1|L5|C|2847
6XA1|1|L5|OMC|2848
6XA1|1|L5|G|2849
6XA1|1|L5|G|2850
*
6XA1|1|L5|U|2874
6XA1|1|L5|G|2875
*
6XA1|1|L5|U|3592
6XA1|1|L5|G|3593
*
6XA1|1|L5|C|3597
6XA1|1|L5|G|3598
6XA1|1|L5|G|3599
6XA1|1|L5|A|3600
6XA1|1|L5|C|3601
6XA1|1|L5|C|3602
6XA1|1|L5|A|3603
6XA1|1|L5|G|3604
6XA1|1|L5|G|3605
*
6XA1|1|L5|C|3814
6XA1|1|L5|A|3815
6XA1|1|L5|C|3816
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- 60S ribosomal protein L24
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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