J5_6XA1_004
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6XA1|1|L5|A|4364, 6XA1|1|L5|G|4421, 6XA1|1|L5|U|4422, 6XA1|1|L5|U|4525, 6XA1|1|L5|U|4526
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XA1|1|L5|A|3882
6XA1|1|L5|G|3883
6XA1|1|L5|A|3884
6XA1|1|L5|A|3885
6XA1|1|L5|G|3886
6XA1|1|L5|A|3887
6XA1|1|L5|C|3888
6XA1|1|L5|C|3889
*
6XA1|1|L5|OMG|4362
6XA1|1|L5|G|4363
6XA1|1|L5|A|4364
6XA1|1|L5|U|4365
6XA1|1|L5|A|4366
6XA1|1|L5|A|4367
6XA1|1|L5|C|4368
6XA1|1|L5|U|4369
6XA1|1|L5|G|4370
*
6XA1|1|L5|C|4414
6XA1|1|L5|U|4415
6XA1|1|L5|U|4416
6XA1|1|L5|5MC|4417
6XA1|1|L5|G|4418
6XA1|1|L5|A|4419
6XA1|1|L5|U|4420
6XA1|1|L5|G|4421
6XA1|1|L5|U|4422
6XA1|1|L5|C|4423
*
6XA1|1|L5|G|4498
6XA1|1|L5|G|4499
6XA1|1|L5|UR3|4500
6XA1|1|L5|U|4501
6XA1|1|L5|PSU|4502
6XA1|1|L5|A|4503
6XA1|1|L5|G|4504
*
6XA1|1|L5|PSU|4522
6XA1|1|L5|A|4523
6XA1|1|L5|G|4524
6XA1|1|L5|U|4525
6XA1|1|L5|U|4526
6XA1|1|L5|U|4527
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Bv
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4
- Chain Lb
- 60S ribosomal protein L29
- Chain NC
- Stalled Nascent chain
- Chain j
- Eukaryotic peptide chain release factor subunit 1
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