J5_6XA1_005
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6XA1|1|L5|G|3901, 6XA1|1|L5|A|4346, 6XA1|1|L5|G|4347, 6XA1|1|L5|A|4348, 6XA1|1|L5|A|4349
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XA1_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3323
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6XA1|1|L5|PSU|3899
6XA1|1|L5|U|3900
6XA1|1|L5|G|3901
6XA1|1|L5|A|3902
*
6XA1|1|L5|U|4158
6XA1|1|L5|U|4159
6XA1|1|L5|U|4160
6XA1|1|L5|G|4161
*
6XA1|1|L5|C|4174
6XA1|1|L5|A|4175
*
6XA1|1|L5|OMU|4197
6XA1|1|L5|OMG|4198
*
6XA1|1|L5|C|4345
6XA1|1|L5|A|4346
6XA1|1|L5|G|4347
6XA1|1|L5|A|4348
6XA1|1|L5|A|4349
6XA1|1|L5|A|4350
6XA1|1|L5|A|4351
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
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