J5_6XE0_002
3D structure
- PDB id
- 6XE0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XE0_002 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.1032
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6XE0|1|W|C|36
6XE0|1|W|U|37
6XE0|1|W|G|38
6XE0|1|W|G|39
*
6XE0|1|W|C|403
6XE0|1|W|G|404
6XE0|1|W|U|405
6XE0|1|W|G|406
*
6XE0|1|W|C|436
6XE0|1|W|U|437
6XE0|1|W|U|438
6XE0|1|W|U|439
6XE0|1|W|C|440
6XE0|1|W|A|441
6XE0|1|W|G|442
*
6XE0|1|W|C|492
6XE0|1|W|A|493
6XE0|1|W|G|494
6XE0|1|W|A|495
6XE0|1|W|A|496
6XE0|1|W|G|497
6XE0|1|W|A|498
6XE0|1|W|A|499
6XE0|1|W|G|500
*
6XE0|1|W|C|545
6XE0|1|W|A|546
6XE0|1|W|A|547
6XE0|1|W|G|548
Current chains
- Chain W
- 16s rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S4
- Chain K
- 30S ribosomal protein S12
Coloring options: