J5_6XE0_003
3D structure
- PDB id
- 6XE0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6XE0|1|W|A|109, 6XE0|1|W|C|352
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XE0_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1469
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XE0|1|W|C|58
6XE0|1|W|A|59
6XE0|1|W|A|60
6XE0|1|W|G|61
*
6XE0|1|W|C|106
6XE0|1|W|G|107
6XE0|1|W|G|108
6XE0|1|W|A|109
6XE0|1|W|C|110
6XE0|1|W|G|111
6XE0|1|W|G|112
6XE0|1|W|G|113
*
6XE0|1|W|C|314
6XE0|1|W|A|315
6XE0|1|W|C|316
*
6XE0|1|W|G|337
6XE0|1|W|A|338
6XE0|1|W|C|339
*
6XE0|1|W|G|350
6XE0|1|W|G|351
6XE0|1|W|C|352
6XE0|1|W|A|353
6XE0|1|W|G|354
Current chains
- Chain W
- 16s rRNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
Coloring options: