3D structure

PDB id
6XE0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
6XE0|1|W|A|109, 6XE0|1|W|C|352
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6XE0_003 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.1469
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6XE0|1|W|C|58
6XE0|1|W|A|59
6XE0|1|W|A|60
6XE0|1|W|G|61
*
6XE0|1|W|C|106
6XE0|1|W|G|107
6XE0|1|W|G|108
6XE0|1|W|A|109
6XE0|1|W|C|110
6XE0|1|W|G|111
6XE0|1|W|G|112
6XE0|1|W|G|113
*
6XE0|1|W|C|314
6XE0|1|W|A|315
6XE0|1|W|C|316
*
6XE0|1|W|G|337
6XE0|1|W|A|338
6XE0|1|W|C|339
*
6XE0|1|W|G|350
6XE0|1|W|G|351
6XE0|1|W|C|352
6XE0|1|W|A|353
6XE0|1|W|G|354

Current chains

Chain W
16s rRNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain T
30S ribosomal protein S20

Coloring options:


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