J5_6XGF_007

3D structure

PDB id

6XGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6XGF|1|a|U|1758, 6XGF|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XGF_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0554

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6XGF|1|a|G|1674
6XGF|1|a|C|1675
6XGF|1|a|A|1676
6XGF|1|a|A|1677
6XGF|1|a|A|1678
6XGF|1|a|A|1679
6XGF|1|a|U|1680
6XGF|1|a|G|1681
6XGF|1|a|G|1682
*
6XGF|1|a|C|1706
6XGF|1|a|G|1707
*
6XGF|1|a|U|1751
6XGF|1|a|C|1752
*
6XGF|1|a|G|1756
6XGF|1|a|A|1757
6XGF|1|a|U|1758
6XGF|1|a|A|1759
6XGF|1|a|C|1760
6XGF|1|a|C|1761
6XGF|1|a|A|1762
6XGF|1|a|G|1763
6XGF|1|a|C|1764
*
6XGF|1|a|G|1988
6XGF|1|a|G|1989
6XGF|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19