J5_6XHV_017

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XHV_017 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0747

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6XHV|1|2a|C|36
6XHV|1|2a|U|37
6XHV|1|2a|G|38
6XHV|1|2a|G|39
*
6XHV|1|2a|C|403
6XHV|1|2a|U|404
6XHV|1|2a|U|405
6XHV|1|2a|G|406
*
6XHV|1|2a|C|436
6XHV|1|2a|U|437
6XHV|1|2a|G|438
6XHV|1|2a|A|439
6XHV|1|2a|A|441
6XHV|1|2a|C|442
*
6XHV|1|2a|G|492
6XHV|1|2a|G|493
6XHV|1|2a|U|494
6XHV|1|2a|A|495
6XHV|1|2a|A|496
6XHV|1|2a|U|498
6XHV|1|2a|A|499
6XHV|1|2a|G|500
*
6XHV|1|2a|C|545
6XHV|1|2a|G|546
6XHV|1|2a|A|547
6XHV|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12