3D structure

PDB id
6XHW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6XHW_008 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0573
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6XHW|1|1a|C|36
6XHW|1|1a|U|37
6XHW|1|1a|G|38
6XHW|1|1a|G|39
*
6XHW|1|1a|C|403
6XHW|1|1a|U|404
6XHW|1|1a|U|405
6XHW|1|1a|G|406
*
6XHW|1|1a|C|436
6XHW|1|1a|U|437
6XHW|1|1a|G|438
6XHW|1|1a|A|439
6XHW|1|1a|A|441
6XHW|1|1a|C|442
*
6XHW|1|1a|G|492
6XHW|1|1a|G|493
6XHW|1|1a|U|494
6XHW|1|1a|A|495
6XHW|1|1a|A|496
6XHW|1|1a|U|498
6XHW|1|1a|A|499
6XHW|1|1a|G|500
*
6XHW|1|1a|C|545
6XHW|1|1a|G|546
6XHW|1|1a|A|547
6XHW|1|1a|G|548

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1d
30S ribosomal protein S4
Chain 1l
30S ribosomal protein S12

Coloring options:


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