J5_6XHW_010

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6XHW|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XHW_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0686

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6XHW|1|2A|C|47
6XHW|1|2A|G|48
6XHW|1|2A|A|49
6XHW|1|2A|U|50
6XHW|1|2A|G|51
6XHW|1|2A|A|52
6XHW|1|2A|A|53
6XHW|1|2A|G|54
*
6XHW|1|2A|C|116
6XHW|1|2A|G|117
6XHW|1|2A|A|118
6XHW|1|2A|A|119
6XHW|1|2A|U|120
6XHW|1|2A|G|121
*
6XHW|1|2A|C|130
6XHW|1|2A|G|131
*
6XHW|1|2A|C|148
6XHW|1|2A|A|149
6XHW|1|2A|C|150
*
6XHW|1|2A|G|176
6XHW|1|2A|G|177
6XHW|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23