3D structure

PDB id
6XHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6XHX_008 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0706
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6XHX|1|1a|C|36
6XHX|1|1a|U|37
6XHX|1|1a|G|38
6XHX|1|1a|G|39
*
6XHX|1|1a|C|403
6XHX|1|1a|U|404
6XHX|1|1a|U|405
6XHX|1|1a|G|406
*
6XHX|1|1a|C|436
6XHX|1|1a|U|437
6XHX|1|1a|G|438
6XHX|1|1a|A|439
6XHX|1|1a|A|441
6XHX|1|1a|C|442
*
6XHX|1|1a|G|492
6XHX|1|1a|G|493
6XHX|1|1a|U|494
6XHX|1|1a|A|495
6XHX|1|1a|A|496
6XHX|1|1a|U|498
6XHX|1|1a|A|499
6XHX|1|1a|G|500
*
6XHX|1|1a|C|545
6XHX|1|1a|G|546
6XHX|1|1a|A|547
6XHX|1|1a|G|548

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1d
30S ribosomal protein S4
Chain 1l
30S ribosomal protein S12

Coloring options:


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