J5_6XHY_018

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XHY_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0689

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6XHY|1|2a|C|36
6XHY|1|2a|U|37
6XHY|1|2a|G|38
6XHY|1|2a|G|39
*
6XHY|1|2a|C|403
6XHY|1|2a|U|404
6XHY|1|2a|U|405
6XHY|1|2a|G|406
*
6XHY|1|2a|C|436
6XHY|1|2a|U|437
6XHY|1|2a|G|438
6XHY|1|2a|A|439
6XHY|1|2a|A|441
6XHY|1|2a|C|442
*
6XHY|1|2a|G|492
6XHY|1|2a|G|493
6XHY|1|2a|U|494
6XHY|1|2a|A|495
6XHY|1|2a|A|496
6XHY|1|2a|U|498
6XHY|1|2a|A|499
6XHY|1|2a|G|500
*
6XHY|1|2a|C|545
6XHY|1|2a|G|546
6XHY|1|2a|A|547
6XHY|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12