J5_6XII_001

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

6XII|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XII_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1101

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6XII|1|D|C|36
6XII|1|D|U|37
6XII|1|D|G|38
6XII|1|D|G|39
*
6XII|1|D|C|403
6XII|1|D|G|404
6XII|1|D|U|405
6XII|1|D|G|406
*
6XII|1|D|C|436
6XII|1|D|U|437
6XII|1|D|U|438
6XII|1|D|U|439
6XII|1|D|C|440
*
6XII|1|D|G|497
6XII|1|D|A|498
6XII|1|D|A|499
6XII|1|D|G|500
*
6XII|1|D|C|545
6XII|1|D|A|546
6XII|1|D|A|547
6XII|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12