J5_6XIJ_007

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6XIJ|1|a|U|1758, 6XIJ|1|a|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XIJ_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0554

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6XIJ|1|a|G|1674
6XIJ|1|a|C|1675
6XIJ|1|a|A|1676
6XIJ|1|a|A|1677
6XIJ|1|a|A|1678
6XIJ|1|a|A|1679
6XIJ|1|a|U|1680
6XIJ|1|a|G|1681
6XIJ|1|a|G|1682
*
6XIJ|1|a|C|1706
6XIJ|1|a|G|1707
*
6XIJ|1|a|U|1751
6XIJ|1|a|C|1752
*
6XIJ|1|a|G|1756
6XIJ|1|a|A|1757
6XIJ|1|a|U|1758
6XIJ|1|a|A|1759
6XIJ|1|a|C|1760
6XIJ|1|a|C|1761
6XIJ|1|a|A|1762
6XIJ|1|a|G|1763
6XIJ|1|a|C|1764
*
6XIJ|1|a|G|1988
6XIJ|1|a|G|1989
6XIJ|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19