J5_6XIQ_001
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGAGUC*GGACC*GUUC*GCGUGGA*UCUAGUGCAGAUC
- Length
- 35 nucleotides
- Bulged bases
- 6XIQ|1|1|G|661, 6XIQ|1|1|G|800, 6XIQ|1|1|C|802, 6XIQ|1|1|G|1380, 6XIQ|1|1|G|1429, 6XIQ|1|1|U|1430, 6XIQ|1|1|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|G|658
6XIQ|1|1|G|659
6XIQ|1|1|A|660
6XIQ|1|1|G|661
6XIQ|1|1|U|662
6XIQ|1|1|C|663
*
6XIQ|1|1|G|799
6XIQ|1|1|G|800
6XIQ|1|1|A|801
6XIQ|1|1|C|802
6XIQ|1|1|C|803
*
6XIQ|1|1|G|941
6XIQ|1|1|U|942
6XIQ|1|1|U|943
6XIQ|1|1|C|944
*
6XIQ|1|1|G|1375
6XIQ|1|1|C|1376
6XIQ|1|1|G|1377
6XIQ|1|1|U|1378
6XIQ|1|1|G|1379
6XIQ|1|1|G|1380
6XIQ|1|1|A|1381
*
6XIQ|1|1|U|1425
6XIQ|1|1|C|1426
6XIQ|1|1|U|1427
6XIQ|1|1|A|1428
6XIQ|1|1|G|1429
6XIQ|1|1|U|1430
6XIQ|1|1|G|1431
6XIQ|1|1|C|1432
6XIQ|1|1|A|1433
6XIQ|1|1|G|1434
6XIQ|1|1|A|1435
6XIQ|1|1|U|1436
6XIQ|1|1|C|1437
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- RPL4A isoform 1
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain e
- RPL32 isoform 1
Coloring options: