J5_6XIQ_004
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GCUUGA*UUUG*CA*UG*CAGAAAAGU
- Length
- 23 nucleotides
- Bulged bases
- 6XIQ|1|1|U|2613, 6XIQ|1|1|A|2799, 6XIQ|1|1|G|2800, 6XIQ|1|1|A|2801, 6XIQ|1|1|A|2802, 6XIQ|1|1|A|2803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|G|2414
6XIQ|1|1|C|2415
6XIQ|1|1|U|2416
6XIQ|1|1|U|2417
6XIQ|1|1|G|2418
6XIQ|1|1|A|2419
*
6XIQ|1|1|U|2611
6XIQ|1|1|U|2612
6XIQ|1|1|U|2613
6XIQ|1|1|G|2614
*
6XIQ|1|1|C|2627
6XIQ|1|1|A|2628
*
6XIQ|1|1|U|2650
6XIQ|1|1|G|2651
*
6XIQ|1|1|C|2798
6XIQ|1|1|A|2799
6XIQ|1|1|G|2800
6XIQ|1|1|A|2801
6XIQ|1|1|A|2802
6XIQ|1|1|A|2803
6XIQ|1|1|A|2804
6XIQ|1|1|G|2805
6XIQ|1|1|U|2806
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain AX
- Transfer RNA; tRNA
- Chain N
- 60S ribosomal protein L15-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- RPL29 isoform 1
- Chain o
- 60S ribosomal protein L42-A
Coloring options: