J5_6XIQ_007

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUUC

Length

43 nucleotides

Bulged bases

6XIQ|1|2|U|128, 6XIQ|1|2|U|129, 6XIQ|1|2|U|132, 6XIQ|1|2|U|133, 6XIQ|1|2|U|134, 6XIQ|1|2|A|135, 6XIQ|1|2|C|136, 6XIQ|1|2|A|140, 6XIQ|1|2|U|141, 6XIQ|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|2|G|123
6XIQ|1|2|A|124
6XIQ|1|2|U|125
6XIQ|1|2|A|126
6XIQ|1|2|G|127
6XIQ|1|2|U|128
6XIQ|1|2|U|129
6XIQ|1|2|C|130
6XIQ|1|2|C|131
6XIQ|1|2|U|132
6XIQ|1|2|U|133
6XIQ|1|2|U|134
6XIQ|1|2|A|135
6XIQ|1|2|C|136
6XIQ|1|2|U|137
6XIQ|1|2|A|138
6XIQ|1|2|C|139
6XIQ|1|2|A|140
6XIQ|1|2|U|141
6XIQ|1|2|G|142
6XIQ|1|2|G|143
*
6XIQ|1|2|C|172
6XIQ|1|2|A|173
6XIQ|1|2|U|174
6XIQ|1|2|G|175
6XIQ|1|2|C|176
6XIQ|1|2|U|177
6XIQ|1|2|U|178
6XIQ|1|2|A|179
6XIQ|1|2|A|180
6XIQ|1|2|A|181
6XIQ|1|2|A|182
*
6XIQ|1|2|U|203
6XIQ|1|2|G|204
*
6XIQ|1|2|C|263
6XIQ|1|2|G|264
6XIQ|1|2|A|265
*
6XIQ|1|2|U|289
6XIQ|1|2|G|290
6XIQ|1|2|G|291
6XIQ|1|2|U|292
6XIQ|1|2|U|293
6XIQ|1|2|C|294

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain u

40S ribosomal protein S4-A

Chain w

40S ribosomal protein S6-A