J5_6XIQ_008

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUUU*AAUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

6XIQ|1|2|U|638, 6XIQ|1|2|U|639, 6XIQ|1|2|U|694, 6XIQ|1|2|C|696, 6XIQ|1|2|C|697, 6XIQ|1|2|U|743, 6XIQ|1|2|U|813, 6XIQ|1|2|G|815, 6XIQ|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|2|A|636
6XIQ|1|2|C|637
6XIQ|1|2|U|638
6XIQ|1|2|U|639
6XIQ|1|2|U|640
6XIQ|1|2|G|641
*
6XIQ|1|2|U|693
6XIQ|1|2|U|694
6XIQ|1|2|U|695
6XIQ|1|2|C|696
6XIQ|1|2|C|697
6XIQ|1|2|U|698
*
6XIQ|1|2|A|740
6XIQ|1|2|C|741
6XIQ|1|2|U|742
6XIQ|1|2|U|743
6XIQ|1|2|U|744
6XIQ|1|2|U|745
*
6XIQ|1|2|A|806
6XIQ|1|2|A|807
6XIQ|1|2|U|808
6XIQ|1|2|A|809
6XIQ|1|2|G|810
6XIQ|1|2|A|811
6XIQ|1|2|A|812
6XIQ|1|2|U|813
6XIQ|1|2|A|814
6XIQ|1|2|G|815
6XIQ|1|2|G|816
6XIQ|1|2|A|817
*
6XIQ|1|2|U|854
6XIQ|1|2|A|855
6XIQ|1|2|A|856
6XIQ|1|2|U|857
6XIQ|1|2|G|858
6XIQ|1|2|A|859
6XIQ|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain AD

40S ribosomal protein S13

Chain AM

RPS22A isoform 1

Chain AN

40S ribosomal protein S23-A

Chain R

60S ribosomal protein L19-A

Chain x

40S ribosomal protein S7-A