Loop J5_6XIQ

3D structure

PDB id: 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å

Loop

Sequence: GGAAGUCGGCAAAAUAG*UG*UG*CGGACAAGG*CACUGUC
Length: 37 nucleotides
Bulged bases: 6XIQ|1|1|G|1902, 6XIQ|1|1|U|1903, 6XIQ|1|1|G|1906, 6XIQ|1|1|C|1907, 6XIQ|1|1|A|1911, 6XIQ|1|1|G|2116, 6XIQ|1|1|A|2117, 6XIQ|1|1|A|2119, 6XIQ|1|1|A|2120, 6XIQ|1|1|G|2335
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6XIQ|1|1|G|1898
6XIQ|1|1|G|1899
6XIQ|1|1|A|1900
6XIQ|1|1|A|1901
6XIQ|1|1|G|1902
6XIQ|1|1|U|1903
6XIQ|1|1|C|1904
6XIQ|1|1|G|1905
6XIQ|1|1|G|1906
6XIQ|1|1|C|1907
6XIQ|1|1|A|1908
6XIQ|1|1|A|1909
6XIQ|1|1|A|1910
6XIQ|1|1|A|1911
6XIQ|1|1|U|1912
6XIQ|1|1|A|1913
6XIQ|1|1|G|1914
*
6XIQ|1|1|U|1938
6XIQ|1|1|G|1939
*
6XIQ|1|1|U|2109
6XIQ|1|1|G|2110
*
6XIQ|1|1|C|2114
6XIQ|1|1|G|2115
6XIQ|1|1|G|2116
6XIQ|1|1|A|2117
6XIQ|1|1|C|2118
6XIQ|1|1|A|2119
6XIQ|1|1|A|2120
6XIQ|1|1|G|2121
6XIQ|1|1|G|2122
*
6XIQ|1|1|C|2331
6XIQ|1|1|A|2332
6XIQ|1|1|C|2333
6XIQ|1|1|U|2334
6XIQ|1|1|G|2335
6XIQ|1|1|U|2336
6XIQ|1|1|C|2337

Current chains

Chain 1: 35S ribosomal RNA

Nearby chains

Chain 2: Small subunit ribosomal RNA; SSU rRNA
Chain B: RPL3 isoform 1
Chain R: 60S ribosomal protein L19-A
Chain V: 60S ribosomal protein L23-A
Chain W: RPL24A isoform 1

J5_6XIQ_009