J5_6XIQ_010
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAAAGAAGACC*GGAUAACUGGCUUGUG*UUUUUGAUUCUUCGAUGUCGG*CUGGGUUUAGACC*GGUUAGUUUUACC
- Length
- 74 nucleotides
- Bulged bases
- 6XIQ|1|1|A|2397, 6XIQ|1|1|G|2400, 6XIQ|1|1|A|2402, 6XIQ|1|1|A|2404, 6XIQ|1|1|A|2817, 6XIQ|1|1|U|2818, 6XIQ|1|1|A|2819, 6XIQ|1|1|A|2820, 6XIQ|1|1|C|2821, 6XIQ|1|1|C|2825, 6XIQ|1|1|G|2828, 6XIQ|1|1|U|2862, 6XIQ|1|1|U|2866, 6XIQ|1|1|G|2871, 6XIQ|1|1|A|2872, 6XIQ|1|1|G|2874, 6XIQ|1|1|U|2953, 6XIQ|1|1|U|2954, 6XIQ|1|1|U|2978, 6XIQ|1|1|U|2979, 6XIQ|1|1|U|2980, 6XIQ|1|1|C|2983
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|G|2396
6XIQ|1|1|A|2397
6XIQ|1|1|A|2398
6XIQ|1|1|A|2399
6XIQ|1|1|G|2400
6XIQ|1|1|A|2401
6XIQ|1|1|A|2402
6XIQ|1|1|G|2403
6XIQ|1|1|A|2404
6XIQ|1|1|C|2405
6XIQ|1|1|C|2406
*
6XIQ|1|1|G|2815
6XIQ|1|1|G|2816
6XIQ|1|1|A|2817
6XIQ|1|1|U|2818
6XIQ|1|1|A|2819
6XIQ|1|1|A|2820
6XIQ|1|1|C|2821
6XIQ|1|1|U|2822
6XIQ|1|1|G|2823
6XIQ|1|1|G|2824
6XIQ|1|1|C|2825
6XIQ|1|1|U|2826
6XIQ|1|1|U|2827
6XIQ|1|1|G|2828
6XIQ|1|1|U|2829
6XIQ|1|1|G|2830
*
6XIQ|1|1|U|2858
6XIQ|1|1|U|2859
6XIQ|1|1|U|2860
6XIQ|1|1|U|2861
6XIQ|1|1|U|2862
6XIQ|1|1|G|2863
6XIQ|1|1|A|2864
6XIQ|1|1|U|2865
6XIQ|1|1|U|2866
6XIQ|1|1|C|2867
6XIQ|1|1|U|2868
6XIQ|1|1|U|2869
6XIQ|1|1|C|2870
6XIQ|1|1|G|2871
6XIQ|1|1|A|2872
6XIQ|1|1|U|2873
6XIQ|1|1|G|2874
6XIQ|1|1|U|2875
6XIQ|1|1|C|2876
6XIQ|1|1|G|2877
6XIQ|1|1|G|2878
*
6XIQ|1|1|C|2948
6XIQ|1|1|U|2949
6XIQ|1|1|G|2950
6XIQ|1|1|G|2951
6XIQ|1|1|G|2952
6XIQ|1|1|U|2953
6XIQ|1|1|U|2954
6XIQ|1|1|U|2955
6XIQ|1|1|A|2956
6XIQ|1|1|G|2957
6XIQ|1|1|A|2958
6XIQ|1|1|C|2959
6XIQ|1|1|C|2960
*
6XIQ|1|1|G|2972
6XIQ|1|1|G|2973
6XIQ|1|1|U|2974
6XIQ|1|1|U|2975
6XIQ|1|1|A|2976
6XIQ|1|1|G|2977
6XIQ|1|1|U|2978
6XIQ|1|1|U|2979
6XIQ|1|1|U|2980
6XIQ|1|1|U|2981
6XIQ|1|1|A|2982
6XIQ|1|1|C|2983
6XIQ|1|1|C|2984
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain AZ
- Transfer RNA; tRNA
- Chain B
- RPL3 isoform 1
- Chain C
- RPL4A isoform 1
- Chain I
- RPL10 isoform 1
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- RPL29 isoform 1
Coloring options: