J5_6XIR_004
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6XIR|1|1|G|2116, 6XIR|1|1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XIR_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0806
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6XIR|1|1|G|1906
6XIR|1|1|C|1907
6XIR|1|1|A|1908
6XIR|1|1|A|1909
6XIR|1|1|A|1910
6XIR|1|1|A|1911
6XIR|1|1|U|1912
6XIR|1|1|A|1913
6XIR|1|1|G|1914
*
6XIR|1|1|U|1938
6XIR|1|1|G|1939
*
6XIR|1|1|U|2109
6XIR|1|1|G|2110
*
6XIR|1|1|C|2114
6XIR|1|1|G|2115
6XIR|1|1|G|2116
6XIR|1|1|A|2117
6XIR|1|1|C|2118
6XIR|1|1|A|2119
6XIR|1|1|A|2120
6XIR|1|1|G|2121
6XIR|1|1|G|2122
*
6XIR|1|1|C|2331
6XIR|1|1|A|2332
6XIR|1|1|C|2333
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain B
- RPL3 isoform 1
- Chain R
- 60S ribosomal protein L19-A
- Chain V
- 60S ribosomal protein L23-A
- Chain W
- RPL24A isoform 1
Coloring options: