J5_6XIR_006
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6XIR|1|1|G|2418, 6XIR|1|1|A|2799, 6XIR|1|1|G|2800, 6XIR|1|1|A|2801, 6XIR|1|1|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XIR_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2449
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6XIR|1|1|U|2416
6XIR|1|1|U|2417
6XIR|1|1|G|2418
6XIR|1|1|A|2419
*
6XIR|1|1|U|2611
6XIR|1|1|U|2612
6XIR|1|1|U|2613
6XIR|1|1|G|2614
*
6XIR|1|1|C|2627
6XIR|1|1|A|2628
*
6XIR|1|1|U|2650
6XIR|1|1|G|2651
*
6XIR|1|1|C|2798
6XIR|1|1|A|2799
6XIR|1|1|G|2800
6XIR|1|1|A|2801
6XIR|1|1|A|2802
6XIR|1|1|A|2803
6XIR|1|1|A|2804
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain N
- 60S ribosomal protein L15-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- RPL29 isoform 1
- Chain o
- 60S ribosomal protein L42-A
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