J5_6XIR_007
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GCAG
- Length
- 22 nucleotides
- Bulged bases
- 6XIR|1|2|U|56, 6XIR|1|2|A|93, 6XIR|1|2|C|424
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIR|1|2|C|54
6XIR|1|2|A|55
6XIR|1|2|U|56
6XIR|1|2|G|57
*
6XIR|1|2|C|90
6XIR|1|2|G|91
6XIR|1|2|A|92
6XIR|1|2|A|93
6XIR|1|2|U|94
6XIR|1|2|G|95
6XIR|1|2|G|96
6XIR|1|2|C|97
*
6XIR|1|2|G|386
6XIR|1|2|A|387
6XIR|1|2|G|388
*
6XIR|1|2|C|409
6XIR|1|2|A|410
6XIR|1|2|C|411
*
6XIR|1|2|G|423
6XIR|1|2|C|424
6XIR|1|2|A|425
6XIR|1|2|G|426
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AO
- 40S ribosomal protein S24-A
- Chain V
- 60S ribosomal protein L23-A
- Chain u
- 40S ribosomal protein S4-A
- Chain w
- 40S ribosomal protein S6-A
- Chain y
- RPS8A isoform 1
- Chain z
- 40S ribosomal protein S9-A
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