J5_6XQE_022

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XQE_022 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0873

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6XQE|1|2a|C|36
6XQE|1|2a|U|37
6XQE|1|2a|G|38
6XQE|1|2a|G|39
*
6XQE|1|2a|C|403
6XQE|1|2a|U|404
6XQE|1|2a|U|405
6XQE|1|2a|G|406
*
6XQE|1|2a|C|436
6XQE|1|2a|U|437
6XQE|1|2a|G|438
6XQE|1|2a|A|439
6XQE|1|2a|A|441
6XQE|1|2a|C|442
*
6XQE|1|2a|G|492
6XQE|1|2a|G|493
6XQE|1|2a|U|494
6XQE|1|2a|A|495
6XQE|1|2a|A|496
6XQE|1|2a|U|498
6XQE|1|2a|A|499
6XQE|1|2a|G|500
*
6XQE|1|2a|C|545
6XQE|1|2a|G|546
6XQE|1|2a|A|547
6XQE|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12