J5_6XYW_002
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 6XYW|1|1|A|674, 6XYW|1|1|U|712
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XYW_002 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.1588
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6XYW|1|1|C|673
6XYW|1|1|A|674
6XYW|1|1|G|675
*
6XYW|1|1|C|710
6XYW|1|1|G|711
6XYW|1|1|U|712
6XYW|1|1|A|713
6XYW|1|1|C|714
*
6XYW|1|1|G|727
6XYW|1|1|G|728
6XYW|1|1|G|729
*
6XYW|1|1|C|1417
6XYW|1|1|A|1418
*
6XYW|1|1|U|2328
6XYW|1|1|G|2329
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AB
- At1g26740/T24P13_11
- Chain Ad
- 50S ribosomal protein L4
- Chain Aj
- At1g01640
- Chain Aq
- 50S ribosomal protein L20
- Chain Ar
- 50S ribosomal protein L21, mitochondrial
- Chain As
- AT1G52370 protein
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