J5_6XYW_011
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CGAGGA*UGAC*GUUU*AC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6XYW|1|1|U|1411
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XYW_011 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.1729
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6XYW|1|1|C|734
6XYW|1|1|G|735
6XYW|1|1|A|736
6XYW|1|1|G|737
6XYW|1|1|G|738
6XYW|1|1|A|739
*
6XYW|1|1|U|811
6XYW|1|1|G|812
6XYW|1|1|A|813
6XYW|1|1|C|814
*
6XYW|1|1|G|953
6XYW|1|1|U|954
6XYW|1|1|U|955
6XYW|1|1|U|956
*
6XYW|1|1|A|1351
6XYW|1|1|C|1352
*
6XYW|1|1|G|1406
6XYW|1|1|A|1407
6XYW|1|1|G|1408
6XYW|1|1|A|1409
6XYW|1|1|A|1410
6XYW|1|1|U|1411
6XYW|1|1|G|1412
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AD
- Ribosomal protein L35
- Chain AH
- Mitochondrial ribosomal protein L51/S25/CI-B8 family protein
- Chain Ad
- 50S ribosomal protein L4
- Chain Al
- Ribosomal protein L18e/L15 superfamily protein
- Chain Aq
- 50S ribosomal protein L20
- Chain Ar
- 50S ribosomal protein L21, mitochondrial
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