J5_6XYW_012
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GCAAAAUGA*UG*CG*CAUACCAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 6XYW|1|1|U|2075, 6XYW|1|1|G|2080
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XYW_012 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.1488
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6XYW|1|1|G|2009
6XYW|1|1|C|2010
6XYW|1|1|A|2011
6XYW|1|1|A|2012
6XYW|1|1|A|2013
6XYW|1|1|A|2014
6XYW|1|1|U|2015
6XYW|1|1|G|2016
6XYW|1|1|A|2017
*
6XYW|1|1|U|2041
6XYW|1|1|G|2042
*
6XYW|1|1|C|2068
6XYW|1|1|G|2069
*
6XYW|1|1|C|2073
6XYW|1|1|A|2074
6XYW|1|1|U|2075
6XYW|1|1|A|2076
6XYW|1|1|C|2077
6XYW|1|1|C|2078
6XYW|1|1|A|2079
6XYW|1|1|G|2080
6XYW|1|1|G|2081
*
6XYW|1|1|C|2299
6XYW|1|1|G|2300
6XYW|1|1|C|2301
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ac
- 50S ribosomal protein L3-2, mitochondrial
- Chain Ak
- 50S ribosomal protein HLP, mitochondrial
- Chain Ap
- At1g24240/F3I6_17
Coloring options: