J5_6XZ7_004

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6XZ7|1|A|U|1758, 6XZ7|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XZ7_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0479

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6XZ7|1|A|G|1674
6XZ7|1|A|C|1675
6XZ7|1|A|A|1676
6XZ7|1|A|A|1677
6XZ7|1|A|A|1678
6XZ7|1|A|A|1679
6XZ7|1|A|U|1680
6XZ7|1|A|G|1681
6XZ7|1|A|G|1682
*
6XZ7|1|A|C|1706
6XZ7|1|A|G|1707
*
6XZ7|1|A|U|1751
6XZ7|1|A|C|1752
*
6XZ7|1|A|G|1756
6XZ7|1|A|A|1757
6XZ7|1|A|U|1758
6XZ7|1|A|A|1759
6XZ7|1|A|C|1760
6XZ7|1|A|C|1761
6XZ7|1|A|A|1762
6XZ7|1|A|G|1763
6XZ7|1|A|C|1764
*
6XZ7|1|A|G|1988
6XZ7|1|A|G|1989
6XZ7|1|A|C|1990

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19