J5_6XZA_002

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XZA_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0571

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6XZA|1|A1|C|36
6XZA|1|A1|U|37
6XZA|1|A1|G|38
6XZA|1|A1|G|39
*
6XZA|1|A1|C|403
6XZA|1|A1|G|404
6XZA|1|A1|U|405
6XZA|1|A1|G|406
*
6XZA|1|A1|C|436
6XZA|1|A1|U|437
6XZA|1|A1|U|438
6XZA|1|A1|U|439
6XZA|1|A1|C|440
6XZA|1|A1|A|441
6XZA|1|A1|G|442
*
6XZA|1|A1|C|492
6XZA|1|A1|A|493
6XZA|1|A1|G|494
6XZA|1|A1|A|495
6XZA|1|A1|A|496
6XZA|1|A1|G|497
6XZA|1|A1|A|498
6XZA|1|A1|A|499
6XZA|1|A1|G|500
*
6XZA|1|A1|C|545
6XZA|1|A1|A|546
6XZA|1|A1|A|547
6XZA|1|A1|G|548

Current chains

Chain A1

16S rRNA

Nearby chains

Chain D1

30S ribosomal protein S4

Chain L1

30S ribosomal protein S12