J5_6XZA_008

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

6XZA|1|A2|A|2448, 6XZA|1|A2|H2U|2449, 6XZA|1|A2|U|2585, 6XZA|1|A2|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZA|1|A2|G|2057
6XZA|1|A2|A|2058
6XZA|1|A2|A|2059
6XZA|1|A2|A|2060
6XZA|1|A2|G|2061
6XZA|1|A2|A|2062
6XZA|1|A2|C|2063
6XZA|1|A2|C|2064
*
6XZA|1|A2|G|2446
6XZA|1|A2|G|2447
6XZA|1|A2|A|2448
6XZA|1|A2|H2U|2449
6XZA|1|A2|A|2450
6XZA|1|A2|A|2451
6XZA|1|A2|C|2452
6XZA|1|A2|A|2453
*
6XZA|1|A2|U|2500
6XZA|1|A2|C|2501
6XZA|1|A2|G|2502
6XZA|1|A2|2MA|2503
6XZA|1|A2|PSU|2504
6XZA|1|A2|G|2505
6XZA|1|A2|U|2506
6XZA|1|A2|C|2507
*
6XZA|1|A2|G|2582
6XZA|1|A2|G|2583
6XZA|1|A2|U|2584
6XZA|1|A2|U|2585
6XZA|1|A2|U|2586
6XZA|1|A2|A|2587
6XZA|1|A2|G|2588
*
6XZA|1|A2|C|2606
6XZA|1|A2|G|2607
6XZA|1|A2|G|2608
6XZA|1|A2|U|2609
6XZA|1|A2|C|2610
6XZA|1|A2|C|2611

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain D2

50S ribosomal protein L3

Chain E2

50S ribosomal protein L4

Chain L2

50S ribosomal protein L15

Chain S2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32

Chain f2

Transfer RNA; tRNA