J5_6XZA_008
3D structure
- PDB id
- 6XZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 6XZA|1|A2|A|2448, 6XZA|1|A2|H2U|2449, 6XZA|1|A2|U|2585, 6XZA|1|A2|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XZA|1|A2|G|2057
6XZA|1|A2|A|2058
6XZA|1|A2|A|2059
6XZA|1|A2|A|2060
6XZA|1|A2|G|2061
6XZA|1|A2|A|2062
6XZA|1|A2|C|2063
6XZA|1|A2|C|2064
*
6XZA|1|A2|G|2446
6XZA|1|A2|G|2447
6XZA|1|A2|A|2448
6XZA|1|A2|H2U|2449
6XZA|1|A2|A|2450
6XZA|1|A2|A|2451
6XZA|1|A2|C|2452
6XZA|1|A2|A|2453
*
6XZA|1|A2|U|2500
6XZA|1|A2|C|2501
6XZA|1|A2|G|2502
6XZA|1|A2|2MA|2503
6XZA|1|A2|PSU|2504
6XZA|1|A2|G|2505
6XZA|1|A2|U|2506
6XZA|1|A2|C|2507
*
6XZA|1|A2|G|2582
6XZA|1|A2|G|2583
6XZA|1|A2|U|2584
6XZA|1|A2|U|2585
6XZA|1|A2|U|2586
6XZA|1|A2|A|2587
6XZA|1|A2|G|2588
*
6XZA|1|A2|C|2606
6XZA|1|A2|G|2607
6XZA|1|A2|G|2608
6XZA|1|A2|U|2609
6XZA|1|A2|C|2610
6XZA|1|A2|C|2611
Current chains
- Chain A2
- 23S rRNA
Nearby chains
- Chain C2
- 50S ribosomal protein L2
- Chain D2
- 50S ribosomal protein L3
- Chain E2
- 50S ribosomal protein L4
- Chain L2
- 50S ribosomal protein L15
- Chain S2
- 50S ribosomal protein L22
- Chain a2
- 50S ribosomal protein L32
- Chain f2
- Transfer RNA; tRNA
Coloring options: