J5_6XZB_007
3D structure
- PDB id
- 6XZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 6XZB|1|A2|U|1758, 6XZB|1|A2|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XZB_007 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0479
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6XZB|1|A2|G|1674
6XZB|1|A2|C|1675
6XZB|1|A2|A|1676
6XZB|1|A2|A|1677
6XZB|1|A2|A|1678
6XZB|1|A2|A|1679
6XZB|1|A2|U|1680
6XZB|1|A2|G|1681
6XZB|1|A2|G|1682
*
6XZB|1|A2|C|1706
6XZB|1|A2|G|1707
*
6XZB|1|A2|U|1751
6XZB|1|A2|C|1752
*
6XZB|1|A2|G|1756
6XZB|1|A2|A|1757
6XZB|1|A2|U|1758
6XZB|1|A2|A|1759
6XZB|1|A2|C|1760
6XZB|1|A2|C|1761
6XZB|1|A2|A|1762
6XZB|1|A2|G|1763
6XZB|1|A2|C|1764
*
6XZB|1|A2|G|1988
6XZB|1|A2|G|1989
6XZB|1|A2|C|1990
Current chains
- Chain A2
- 23S rRNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain D2
- 50S ribosomal protein L3
- Chain K2
- 50S ribosomal protein L14
- Chain P2
- 50S ribosomal protein L19
Coloring options: