J5_6Y57_009
3D structure
- PDB id
- 6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome in hybrid-PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6Y57|1|S2|U|55, 6Y57|1|S2|A|92, 6Y57|1|S2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6Y57_009 not in the Motif Atlas
- Homologous match to J5_8CRE_020
- Geometric discrepancy: 0.091
- The information below is about J5_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6Y57|1|S2|C|53
6Y57|1|S2|A|54
6Y57|1|S2|U|55
6Y57|1|S2|G|56
*
6Y57|1|S2|C|89
6Y57|1|S2|G|90
6Y57|1|S2|A|91
6Y57|1|S2|A|92
6Y57|1|S2|U|93
6Y57|1|S2|G|94
6Y57|1|S2|G|95
6Y57|1|S2|C|96
*
6Y57|1|S2|G|434
6Y57|1|S2|A|435
6Y57|1|S2|G|436
*
6Y57|1|S2|C|457
6Y57|1|S2|A|458
6Y57|1|S2|C|459
*
6Y57|1|S2|G|470
6Y57|1|S2|G|471
6Y57|1|S2|C|472
6Y57|1|S2|A|473
6Y57|1|S2|G|474
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain LV
- 60S ribosomal protein L23
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: