J5_8CRE_020
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8CRE|1|CM|A|93, 8CRE|1|CM|C|422
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CRE|1|CM|C|54
8CRE|1|CM|A|55
8CRE|1|CM|U|56
8CRE|1|CM|G|57
*
8CRE|1|CM|C|90
8CRE|1|CM|G|91
8CRE|1|CM|A|92
8CRE|1|CM|A|93
8CRE|1|CM|U|94
8CRE|1|CM|G|95
8CRE|1|CM|G|96
8CRE|1|CM|C|97
*
8CRE|1|CM|G|384
8CRE|1|CM|A|385
8CRE|1|CM|G|386
*
8CRE|1|CM|C|407
8CRE|1|CM|A|408
8CRE|1|CM|C|409
*
8CRE|1|CM|G|420
8CRE|1|CM|G|421
8CRE|1|CM|C|422
8CRE|1|CM|A|423
8CRE|1|CM|G|424
Current chains
- Chain CM
- 18S
Nearby chains
- Chain BQ
- 60S ribosomal protein L23-A
- Chain CR
- 40S ribosomal protein S4
- Chain CT
- 40S ribosomal protein S6
- Chain CV
- 40S ribosomal protein S8
- Chain CW
- Ribosomal protein S4
- Chain DL
- 40S ribosomal protein S24
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