3D structure

PDB id
8CRE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAUG*CGAAUGGC*GAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
8CRE|1|CM|A|93, 8CRE|1|CM|C|422
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8CRE|1|CM|C|54
8CRE|1|CM|A|55
8CRE|1|CM|U|56
8CRE|1|CM|G|57
*
8CRE|1|CM|C|90
8CRE|1|CM|G|91
8CRE|1|CM|A|92
8CRE|1|CM|A|93
8CRE|1|CM|U|94
8CRE|1|CM|G|95
8CRE|1|CM|G|96
8CRE|1|CM|C|97
*
8CRE|1|CM|G|384
8CRE|1|CM|A|385
8CRE|1|CM|G|386
*
8CRE|1|CM|C|407
8CRE|1|CM|A|408
8CRE|1|CM|C|409
*
8CRE|1|CM|G|420
8CRE|1|CM|G|421
8CRE|1|CM|C|422
8CRE|1|CM|A|423
8CRE|1|CM|G|424

Current chains

Chain CM
18S

Nearby chains

Chain BQ
60S ribosomal protein L23-A
Chain CR
40S ribosomal protein S4
Chain CT
40S ribosomal protein S6
Chain CV
40S ribosomal protein S8
Chain CW
Ribosomal protein S4
Chain DL
40S ribosomal protein S24

Coloring options:

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